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To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("fastLiquidAssociation")
In most cases, you don't need to download the package archive at all.
fastLiquidAssociation
functions for genome-wide application of Liquid Association
Bioconductor version: 3.0
This package extends the function of the LiquidAssociation package for genome-wide application. It integrates a screening method into the LA analysis to reduce the number of triplets to be examined for a high LA value and provides code for use in subsequent significance analyses.
Author: Tina Gunderson
Maintainer: Tina Gunderson <gunderson.tina at gmail.com>
Citation (from within R,
enter citation("fastLiquidAssociation")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("fastLiquidAssociation")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("fastLiquidAssociation")
| fastLiquidAssociation Vignette | ||
| Reference Manual |
Details
| biocViews | CellBiology, GeneExpression, Genetics, Pathways, Software |
| Version | 1.2.2 |
| In Bioconductor since | BioC 2.14 (R-3.1) |
| License | GPL-2 |
| Depends | methods, LiquidAssociation, parallel, stats, Hmisc |
| Imports | WGCNA |
| LinkingTo | |
| Suggests | GOstats, yeastCC, org.Sc.sgd.db |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | fastLiquidAssociation_1.2.2.tar.gz |
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | fastLiquidAssociation_1.2.2.tgz |
| Mac OS X 10.9 (Mavericks) | fastLiquidAssociation_1.2.2.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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