To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("CAMERA")
In most cases, you don't need to download the package archive at all.
CAMERA
Collection of annotation related methods for mass spectrometry data
Bioconductor version: 3.0
Annotation of peaklists generated by xcms, rule based annotation of isotopes and adducts, EIC correlation based tagging of unknown adducts and fragments
Author: Carsten Kuhl, Ralf Tautenhahn, Steffen Neumann {ckuhl|sneumann}@ipb-halle.de, rtautenh@scripps.edu
Maintainer: Carsten Kuhl <ckuhl at ipb-halle.de>
Citation (from within R,
enter citation("CAMERA")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("CAMERA")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("CAMERA")
| R Script | Molecule Identification with CAMERA | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | MassSpectrometry, Software |
| Version | 1.22.0 |
| In Bioconductor since | BioC 2.4 (R-2.9) |
| License | GPL (>= 2) |
| Depends | R (>= 2.1.0), methods, Biobase, xcms(>= 1.13.5), igraph |
| Imports | methods, xcms, RBGL, graph, graphics, grDevices, stats, utils, Hmisc, igraph |
| LinkingTo | |
| Suggests | faahKO, RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | Rmpi, snow |
| URL | http://msbi.ipb-halle.de/msbi/CAMERA/ |
| Depends On Me | flagme, MAIT, metaMS |
| Imports Me | |
| Suggests Me | RMassBank |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | CAMERA_1.22.0.tar.gz |
| Windows Binary | CAMERA_1.22.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | CAMERA_1.22.0.tgz |
| Mac OS X 10.9 (Mavericks) | CAMERA_1.22.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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