To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("MAIT")
In most cases, you don't need to download the package archive at all.
MAIT
Statistical Analysis of Metabolomic Data
Bioconductor version: 3.0
The MAIT package contains functions to perform end-to-end statistical analysis of LC/MS Metabolomic Data. Special emphasis is put on peak annotation and in modular function design of the functions.
Author: Francesc Fernandez-Albert, Rafael Llorach, Cristina Andres-LaCueva, Alexandre Perera
Maintainer: Francesc Fernandez-Albert <francesc.fernandez.albert at upc.edu>
Citation (from within R,
enter citation("MAIT")):
Installation
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("MAIT")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("MAIT")
| R Script | MAIT Vignette | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | MassSpectrometry, Metabolomics, Software |
| Version | 1.0.0 |
| In Bioconductor since | BioC 3.0 (R-3.1) |
| License | GPL-2 |
| Depends | R (>= 2.10), CAMERA, Rcpp, pls |
| Imports | gplots, e1071, class, MASS, plsgenomics, agricolae, xcms, methods, caret |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | rgl |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | MAIT_1.0.0.tar.gz |
| Windows Binary | MAIT_1.0.0.zip |
| Mac OS X 10.6 (Snow Leopard) | MAIT_1.0.0.tgz |
| Mac OS X 10.9 (Mavericks) | MAIT_1.0.0.tgz |
| Browse/checkout source | (username/password: readonly) |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Counting Reads for Differential Expression (parathyroideSE vignette)
- Annotation
- Annotating Variants
- Annotating Ranges
- Flow Cytometry and other assays
- Candidate Binding Sites for Known Transcription Factors
- Cloud-enabled cis-eQTL search and annotation
- RNA-Seq workflow: gene-level exploratory analysis and differential expression
- Changing genomic coordinate systems with rtracklayer::liftOver
- Mass spectrometry and proteomics data analysis
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