GGdata
all 90 hapmap CEU samples, 47K expression, 4mm SNP
Bioconductor version: 2.9
data exemplars dealing with hapmap SNP reports, GWAS, etc.
Author: VJ Carey <stvjc at channing.harvard.edu>
Maintainer: VJ Carey <stvjc at channing.harvard.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("GGdata")
To cite this package in a publication, start R and enter:
citation("GGdata")
Documentation
| Reference Manual |
Details
| biocViews | ExperimentData, HapMap |
| Depends | R (>= 2.12.0), methods, Biobase(>= 2.5.5), GGBase, snpStats, illuminaHumanv1.db, AnnotationDbi |
| Imports | |
| Suggests | |
| System Requirements | |
| License | LGPL |
| URL | |
| Depends On Me | ggtut |
| Imports Me | |
| Suggests Me | encoDnaseI, GGtools |
| Version | 1.0.18 |
Package Downloads
| Package Source | GGdata_1.0.18.tar.gz |
| Windows Binary | GGdata_1.0.18.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | GGdata_1.0.18.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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