XDE
XDE: a Bayesian hierarchical model for cross-study analysis of differential gene expression
Bioconductor version: 2.9
Multi-level model for cross-study detection of differential gene expression.
Author: R.B. Scharpf, G. Parmigiani, A.B. Nobel, and H. Tjelmeland
Maintainer: Robert Scharpf <rscharpf at jhsph.edu>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("XDE")
To cite this package in a publication, start R and enter:
citation("XDE")
Documentation
| R Script | XDE Vignette | |
| xdeLIN.pdf | ||
| R Script | XdeParameterClass Vignette | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Microarray, Bioinformatics, DifferentialExpression |
| Depends | R (>= 2.10.0), Biobase(>= 2.5.5), methods, graphics |
| Imports | Biobase, genefilter, graphics, grDevices, gtools, MergeMaid, methods, stats, utils, mvtnorm |
| Suggests | siggenes, genefilter, MASS, RColorBrewer, GeneMeta |
| System Requirements | |
| License | LGPL-2 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 2.0.0 |
| Since | Bioconductor 2.2 (R-2.7) |
Package Downloads
| Package Source | XDE_2.0.0.tar.gz |
| Windows Binary | XDE_2.0.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | XDE_2.0.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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