Statistical analysis of high-throughput RNAi screens

Bioconductor version: 2.9

RNAither analyzes cell-based RNAi screens, and includes quality assessment, customizable normalization and statistical tests, leading to lists of significant genes and biological processes.

Author: Nora Rieber and Lars Kaderali, University of Heidelberg, Viroquant Research Group Modeling, Im Neuenheimer Feld 267, 69120 Heidelberg, Germany

Maintainer: Nora Rieber <RNAither at gmx.de>

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PDF R Script RNAither, an automated pipeline for the statistical analysis of high-throughput RNAi screens
PDF   Reference Manual


biocViews CellBasedAssays, QualityControl, Preprocessing, Visualization, Bioinformatics, Annotation, GO
Depends R (>= 2.7.0), topGO, RankProd, prada
Imports geneplotter, limma, biomaRt, car, splots, methods
System Requirements
License Artistic-2.0
Depends On Me
Imports Me
Suggests Me
Version 2.2.0
Since Bioconductor 2.3 (R-2.8)

Package Downloads

Package Source RNAither_2.2.0.tar.gz
Windows Binary RNAither_2.2.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary RNAither_2.2.0.tgz
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