Quality assessment and low-level analysis for Illumina BeadArray data

Bioconductor version: 2.9

The package is able to read bead-level data (raw TIFFs and text files) output by BeadScan as well as bead-summary data from BeadStudio. Methods for quality assessment and low-level analysis are provided.

Author: Mark Dunning, Mike Smith, Jonathan Cairns, Andy Lynch, Matt Ritchie

Maintainer: Mark Dunning <Mark.Dunning at>

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PDF R Script beadarray.pdf
PDF R Script beadlevel.pdf
PDF R Script beadsummary.pdf
PDF R Script ImageProcessing.pdf
PDF   Reference Manual
Text   NEWS


biocViews Microarray, OneChannel, QualityControl, Preprocessing
Depends R (>= 2.13.0), Biobase(>= 2.5.5), methods, ggplot2
Imports BeadDataPackR, limma, AnnotationDbi, reshape2
Suggests lumi, vsn, affy, hwriter, beadarrayExampleData, illuminaHumanv3.db
System Requirements
License GPL-2
Depends On Me beadarrayExampleData
Imports Me arrayQualityMetrics, BeadArrayUseCases
Suggests Me beadarraySNP, lumi
Version 2.4.2
Since Bioconductor 1.8 (R-2.3)

Package Downloads

Package Source beadarray_2.4.2.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary beadarray_2.4.2.tgz
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