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To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("beadarray")
In most cases, you don't need to download the package archive at all.
beadarray
|
This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see beadarray.
Quality assessment and low-level analysis for Illumina BeadArray data
Bioconductor version: 2.8
The package is able to read bead-level data (raw TIFFs and text files) output by BeadScan as well as bead-summary data from BeadStudio. Methods for quality assessment and low-level analysis are provided.
Author: Mark Dunning, Mike Smith, Jonathan Cairns, Andy Lynch, Matt Ritchie
Maintainer: Mark Dunning <Mark.Dunning at cancer.org.uk>
Citation (from within R,
enter citation("beadarray")):
Installation
To install this package, start R and enter:
## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("beadarray")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("beadarray")
| beadarray.pdf | ||
| beadlevel.pdf | ||
| beadsummary.pdf | ||
| ImageProcessing.pdf | ||
| Reference Manual |
Details
| biocViews | Microarray, OneChannel, Preprocessing, QualityControl, Software |
| Version | 2.2.0 |
| In Bioconductor since | BioC 1.8 (R-2.3) (10 years) |
| License | GPL-2 |
| Depends | R (>= 2.13.0), Biobase(>= 2.5.5), methods |
| Imports | BeadDataPackR, limma |
| LinkingTo | |
| Suggests | lumi, vsn, affy, hwriter |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | arrayQualityMetrics |
| Suggests Me | beadarraySNP, lumi |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | beadarray_2.2.0.tar.gz |
| Windows Binary | beadarray_2.2.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | |
| Mac OS X 10.9 (Mavericks) | |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/beadarray/tree/release-2.8 |
| Package Short Url | http://bioconductor.org/packages/beadarray/ |
| Package Downloads Report | Download Stats |
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