source("http://bioconductor.org/biocLite.R")
biocLite("GEOquery")

GEOquery

Get data from NCBI Gene Expression Omnibus (GEO)

Bioconductor version: 2.13

The NCBI Gene Expression Omnibus (GEO) is a public repository of microarray data. Given the rich and varied nature of this resource, it is only natural to want to apply BioConductor tools to these data. GEOquery is the bridge between GEO and BioConductor.

Author: Sean Davis <sdavis2 at mail.nih.gov>

Maintainer: Sean Davis <sdavis2 at mail.nih.gov>

Installation

To install this package, start R and enter:

source("http://bioconductor.org/biocLite.R")
biocLite("GEOquery")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GEOquery")

 

PDF	R Script	GEOquery
PDF		Reference Manual

Details

biocViews	DataImport, Microarray, OneChannel, SAGE, Software, TwoChannel
Version	2.28.0
In Bioconductor since	BioC 1.8 (R-2.3)
License	GPL-2
Depends	methods, Biobase
Imports	XML, RCurl
Suggests	limma, RUnit
System Requirements
URL	http://watson.nci.nih.gov/~sdavis
Depends On Me	DrugVsDisease, dyebiasexamples, GEOmetadb, SCAN.UPC
Imports Me	BeadArrayUseCases, ChIPXpress, SRAdb, virtualArray
Suggests Me	antiProfilesData, dyebias, GeneExpressionSignature, parathyroid, parathyroidSE, PGSEA, TargetScore

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source	GEOquery_2.28.0.tar.gz
Windows Binary	GEOquery_2.28.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	GEOquery_2.28.0.tgz
Browse/checkout source	(username/password: readonly)
Package Downloads Report	Download Stats