AffyExpress

Affymetrix Quality Assessment and Analysis Tool

Bioconductor version: Release (2.12)

The purpose of this package is to provide a comprehensive and easy-to-use tool for quality assessment and to identify differentially expressed genes in the Affymetrix gene expression data.

Author: Xiwei Wu <xwu at coh.org>, Xuejun Arthur Li <xueli at coh.org>

Maintainer: Xuejun Arthur Li <xueli at coh.org>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("AffyExpress")

To cite this package in a publication, start R and enter:

    citation("AffyExpress")

Documentation

PDF	R Script	1. Primer
PDF		Reference Manual

Details

biocViews	Annotation, Bioinformatics, DifferentialExpression, Microarray, OneChannel, Preprocessing, QualityControl, ReportWriting, Software, Visualization
Version	1.26.0
In Bioconductor since	BioC 2.1 (R-2.6)
License	LGPL
Depends	R (>= 2.10), affy(>= 1.23.4), limma
Imports
Suggests	simpleaffy, R2HTML, affyPLM, hgu95av2cdf, hgu95av2, test3cdf, genefilter, estrogen, annaffy, gcrma
System Requirements
URL
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source	AffyExpress_1.26.0.tar.gz
Windows Binary	AffyExpress_1.26.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)	AffyExpress_1.26.0.tgz
Package Downloads Report	Download Stats

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