clusterProfiler

statistical analysis and visulization of functional profiles for genes and gene clusters

Bioconductor version: Release (2.11)

The package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("clusterProfiler")

To cite this package in a publication, start R and enter:

    citation("clusterProfiler")

PDF	R Script	An introduction to clusterProfiler
PDF		clusterProfiler_for_unsupported_organism.pdf
PDF		omics2012.pdf
PDF		Reference Manual
Text		NEWS

biocViews	Clustering, GO, GeneSetEnrichment, MultipleComparisons, Pathways, Software, Visualization
Version	1.6.0
In Bioconductor since	BioC 2.8 (R-2.13)
License	Artistic-2.0
Depends	R (>= 2.10), ggplot2
Imports	methods, stats4, DBI, plyr, AnnotationDbi, GO.db, KEGG.db, org.Hs.eg.db, DOSE
Suggests	GOSemSim, ReactomePA
System Requirements
URL	http://online.liebertpub.com/doi/abs/10.1089/omi.2011.0118
Depends On Me
Imports Me
Suggests Me	DOSE, GOSemSim, ReactomePA

Common Bioconductor workflows include:

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