Disease Ontology Semantic and Enrichment analysis

Bioconductor version: Release (2.11)

Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for measuring DO semantic similarities, and hypergeometric test for enrichment analysis.

Author: Guangchuang Yu, Li-Gen Wang

Maintainer: Guangchuang Yu <guangchuangyu at>

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PDF R Script An introduction to DOSE
PDF   Reference Manual
Text   NEWS


biocViews Annotation, Bioinformatics, Software
Version 1.4.0
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends R (>= 2.10), ggplot2
Imports methods, plyr, qvalue, stats4, AnnotationDbi, DO.db,, igraph, scales, reshape2, graphics, GOSemSim
Suggests clusterProfiler, ReactomePA
System Requirements
Depends On Me ReactomePA
Imports Me clusterProfiler
Suggests Me GOSemSim

Package Downloads

Package Source DOSE_1.4.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) DOSE_1.4.0.tgz
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