Reactome Pathway Analysis

Bioconductor version: Release (2.11)

This package provides functions for pathway analysis based on REACTOME pathway database. It will implement enrichment analysis, gene set enrichment analysis and functional modules detection.

Author: Guangchuang Yu <guangchuangyu at>

Maintainer: Guangchuang Yu <guangchuangyu at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script An introduction to ReactomePA
PDF cnetplot.pdf
PDF rPAclusterProfiler.pdf
PDF   Reference Manual
Text   NEWS


biocViews Bioinformatics, Pathways, Software, Visualization
Version 1.2.1
In Bioconductor since BioC 2.10 (R-2.15)
License GPL-2
Depends R (>= 2.10), DOSE
Imports methods, AnnotationDbi, reactome.db, stats4, plyr, igraph, qvalue, graphics
Suggests clusterProfiler, GOSemSim,
System Requirements
Depends On Me
Imports Me
Suggests Me clusterProfiler, DOSE

Package Downloads

Package Source ReactomePA_1.2.1.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) ReactomePA_1.2.1.tgz
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