HTSeqGenie

High-throughput sequencing data analysis pipeline.

Bioconductor version: Release (2.11)

A software package to analyse high-throughput sequencing experiments

Author: Gregoire Pau, Cory Barr, Jens Reeder, Michael Lawrence, Jeremiah Degenhardt, Tom Wu, Melanie Huntley, Matt Brauer

Maintainer: Gregoire Pau <pau.gregoire at gene.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("HTSeqGenie")

To cite this package in a publication, start R and enter:

    citation("HTSeqGenie")

PDF	R Script	gmapR
PDF		Reference Manual

biocViews	Software
Version	1.0.0
In Bioconductor since	BioC 2.11 (R-2.15)
License	Artistic-2.0
Depends	R (>= 2.15.0), ShortRead(>= 1.14.4), parallel, hwriter, Cairo, tools, gmapR(>= 0.99.23), logging
Imports	BiocGenerics(>= 0.2.0), IRanges(>= 1.14.3), GenomicRanges(>= 1.7.12), Rsamtools(>= 1.8.5), Biostrings(>= 2.24.1), chipseq(>= 1.7.1), rtracklayer(>= 1.17.19), GenomicFeatures(>= 1.9.31)
Suggests	TxDb.Hsapiens.UCSC.hg19.knownGene, GenomicFeatures, LungCancerLines, org.Hs.eg.db
System Requirements
URL
Depends On Me
Imports Me
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