High-throughput sequencing data analysis pipeline.

Bioconductor version: Release (2.11)

A software package to analyse high-throughput sequencing experiments

Author: Gregoire Pau, Cory Barr, Jens Reeder, Michael Lawrence, Jeremiah Degenhardt, Tom Wu, Melanie Huntley, Matt Brauer

Maintainer: Gregoire Pau <pau.gregoire at>

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To cite this package in a publication, start R and enter:



PDF R Script gmapR
PDF   Reference Manual


biocViews Software
Version 1.0.0
In Bioconductor since BioC 2.11 (R-2.15)
License Artistic-2.0
Depends R (>= 2.15.0), ShortRead(>= 1.14.4), parallel, hwriter, Cairo, tools, gmapR(>= 0.99.23), logging
Imports BiocGenerics(>= 0.2.0), IRanges(>= 1.14.3), GenomicRanges(>= 1.7.12), Rsamtools(>= 1.8.5), Biostrings(>= 2.24.1), chipseq(>= 1.7.1), rtracklayer(>= 1.17.19), GenomicFeatures(>= 1.9.31)
Suggests TxDb.Hsapiens.UCSC.hg19.knownGene, GenomicFeatures, LungCancerLines,
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source HTSeqGenie_1.0.0.tar.gz
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