Annotation of Genetic Variants

Bioconductor version: Release (2.11)

Annotate variants with respect to location and amino acid coding

Author: Valerie Obenchain, Martin Morgan, Michael Lawrence

Maintainer: Valerie Obenchain <vobencha at>

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PDF R Script Introduction to VariantAnnotation
PDF   Reference Manual
Text   NEWS


biocViews Annotation, DataImport, Genetics, HighThroughputSequencing, Homo_sapiens, SNP, Sequencing, Software
Version 1.4.12
In Bioconductor since BioC 2.9 (R-2.14)
License Artistic-2.0
Depends R (>= 2.8.0), methods, GenomicRanges(>= 1.9.56), Rsamtools(>= 1.9.4), IRanges(>= 1.15.48)
Imports methods, BiocGenerics(>= 0.1.0), IRanges, Biobase(>= 2.15.1), Rsamtools(>= 1.9.4), AnnotationDbi(>= 1.17.11), Biostrings(>= 2.25.2), zlibbioc, BSgenome, GenomicFeatures(>= 1.9.35), DBI
Suggests RUnit, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP.20110815, SIFT.Hsapiens.dbSNP132, PolyPhen.Hsapiens.dbSNP131, snpStats
System Requirements
Depends On Me cgdv17, PolyPhen.Hsapiens.dbSNP131, SIFT.Hsapiens.dbSNP132, VariantTools
Imports Me FunciSNP, ggbio, GGtools, gmapR, R453Plus1Toolbox, VariantTools
Suggests Me GenomicRanges, gmapR, GWASTools

Package Downloads

Package Source VariantAnnotation_1.4.12.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) VariantAnnotation_1.4.12.tgz
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