SnpMatrix and XSnpMatrix classes and methods

Bioconductor version: Release (2.11)

Classes and statistical methods for large SNP association studies, extending the snpMatrix package (now removed)

Author: David Clayton <dc208 at>

Maintainer: David Clayton <dc208 at>

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To cite this package in a publication, start R and enter:



PDF R Script Data input
PDF R Script Imputation and meta-analysis
PDF R Script LD statistics
PDF R Script Principal components analysis
PDF R Script snpMatrix-differences
PDF R Script snpStats introduction
PDF R Script TDT tests
HTML index.html
PDF   Reference Manual


biocViews GeneticVariability, Microarray, SNP, Software
Version 1.8.2
In Bioconductor since BioC 2.8 (R-2.13)
License GPL-3
Depends R(>= 2.10.0), survival, methods, Matrix
Imports graphics, grDevices, methods, stats, survival, utils, Matrix, BiocGenerics
Suggests hexbin
System Requirements
Depends On Me GGBase, GGdata, ggtut, gwascat
Imports Me FunciSNP, GGtools
Suggests Me crlmm, GWASTools, VariantAnnotation

Package Downloads

Package Source snpStats_1.8.2.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) snpStats_1.8.2.tgz
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