A package for importing and analyzing data from Roche's Genome Sequencer System.

Bioconductor version: Release (2.11)

The R453Plus1 Toolbox comprises useful functions for the analysis of data generated by Roche's 454 sequencing platform. It adds functions for quality assurance as well as for annotation and visualization of detected variants, complementing the software tools shipped by Roche with their product. Further, a pipeline for the detection of structural variants is provided.

Author: Hans-Ulrich Klein, Christoph Bartenhagen, Christian Ruckert

Maintainer: Hans-Ulrich Klein <h.klein at uni-muenster.de>

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biocViews DataImport, DataRepresentation, HighThroughputSequencing, Infrastructure, QualityControl, ReportWriting, Software, Visualization
Version 1.8.1
In Bioconductor since BioC 2.7 (R-2.12)
License LGPL-3
Depends R (>= 2.12.0), BiocGenerics, Biobase, Biostrings, BSgenome.Scerevisiae.UCSC.sacCer2,TeachingDemos
Imports BiocGenerics(>= 0.1.3), Biobase(>= 2.15.1), biomaRt, Biostrings, BSgenome, IRanges(>= 1.13.10), methods, R2HTML, Rsamtools, rtracklayer, ShortRead, VariantAnnotation
Suggests rtracklayer, ShortRead, Rsamtools, BSgenome.Hsapiens.UCSC.hg19
System Requirements
Depends On Me
Imports Me
Suggests Me

Package Downloads

Package Source R453Plus1Toolbox_1.8.1.tar.gz
Windows Binary R453Plus1Toolbox_1.8.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) R453Plus1Toolbox_1.8.1.tgz
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