A package for de novo CNV detection in case-parent trios

Bioconductor version: Release (2.11)

Analysis of de novo copy number variants in trios from high-dimensional genotyping platforms

Author: Robert B Scharpf, Moiz Bootwalla, and Ingo Ruczinski

Maintainer: Robert B Scharpf <rscharpf at>

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PDF R Script Detection of de novo copy number alterations in case-parent trios
PDF   Reference Manual
Text   NEWS


biocViews Bioinformatics, CopyNumberVariants, Microarray, SNP, Software
Version 1.2.4
In Bioconductor since BioC 2.10 (R-2.15)
License Artistic-2.0
Depends R (>= 2.14), BiocGenerics(>= 0.3.2), IRanges(>= 1.13.30)
Imports methods, DNAcopy, utils, msm, lattice, BiocGenerics, VanillaICE(>= 1.19.23), ff, SNPchip(>= 2.3.10), Biobase(>= 2.17.8), foreach, oligoClasses(>= 1.19.34), GenomicRanges
Suggests human610quadv1bCrlmm, RUnit
System Requirements
Depends On Me
Imports Me
Suggests Me

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Package Source MinimumDistance_1.2.4.tar.gz
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MacOS 10.5 (Leopard) MinimumDistance_1.2.4.tgz
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