marray

Exploratory analysis for two-color spotted microarray data

Bioconductor version: 2.10

Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.

Author: Yee Hwa (Jean) Yang <jeany at maths.usyd.edu.au> with contributions from Agnes Paquet and Sandrine Dudoit.

Maintainer: Yee Hwa (Jean) Yang <jean at biostat.ucsf.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("marray")

To cite this package in a publication, start R and enter:

    citation("marray")

Documentation

PDF R Script ExampleHTML.pdf
PDF R Script marray Normalization
PDF R Script marray Overview
PDF R Script marrayClasses Overview
PDF R Script marrayClasses Tutorial (short)
PDF R Script marrayInput Introduction
PDF R Script marrayPlots Overview
PDF R Script widget1.pdf
PDF   Reference Manual
Text   LICENSE

Details

biocViews Microarray, Preprocessing, Software, TwoChannel
Depends R (>= 2.10.0), limma, methods
Imports
Suggests tkWidgets
System Requirements
License LGPL
URL http://www.maths.usyd.edu.au/u/jeany/
Depends On Me beta7, CGHbase, convert, dyebias, dyebiasexamples, maigesPack, nnNorm, OLIN, stepNorm, TurboNorm
Imports Me arrayQuality, nnNorm, OLIN, OLINgui, sigaR, stepNorm, timecourse
Suggests Me Agi4x44PreProcess, DEGraph, Mfuzz
Version 1.34.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source marray_1.34.0.tar.gz
Windows Binary marray_1.34.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary marray_1.34.0.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center