OLIN
Optimized local intensity-dependent normalisation of two-color microarrays
Bioconductor version: 2.10
Functions for normalisation of two-color microarrays by optimised local regression and for detection of artefacts in microarray data
Author: Matthias Futschik <mfutschik at ualg.pt>
Maintainer: Matthias Futschik <mfutschik at ualg.pt>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("OLIN")
To cite this package in a publication, start R and enter:
citation("OLIN")
Documentation
| R Script | Introduction to OLIN | |
| Reference Manual |
Details
| biocViews | Microarray, Preprocessing, QualityControl, Software, TwoChannel, Visualization |
| Depends | R (>= 2.10), methods, locfit, marray |
| Imports | graphics, grDevices, limma, marray, methods, stats |
| Suggests | convert |
| System Requirements | |
| License | GPL-2 |
| URL | http://itb.biologie.hu-berlin.de/~futschik/software/R/OLIN/index.html |
| Depends On Me | OLINgui |
| Imports Me | OLINgui |
| Suggests Me | maigesPack |
| Version | 1.34.0 |
| Since | Bioconductor 1.6 (R-2.1) or earlier |
Package Downloads
| Package Source | OLIN_1.34.0.tar.gz |
| Windows Binary | OLIN_1.34.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | OLIN_1.34.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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