genomeIntervals

Operations on genomic intervals

Bioconductor version: 2.10

This package defines classes for representing genomic intervals and provides functions and methods for working with these. Note: The package provides the basic infrastructure for and is enhanced by the package 'girafe'.

Author: Julien Gagneur <gagneur at embl.de>, Joern Toedling, Richard Bourgon, Nicolas Delhomme

Maintainer: Julien Gagneur <gagneur at embl.de>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("genomeIntervals")

To cite this package in a publication, start R and enter:

    citation("genomeIntervals")

Documentation

PDF	R Script	Overview of the genomeIntervals package.
PDF		Reference Manual

Details

biocViews	DataImport, Genetics, Infrastructure, Software
Depends	R (>= 2.15.0), methods, intervals (>= 0.13.3), BiocGenerics(>= 0.1.11)
Imports	methods, Biobase
Suggests
System Requirements
License	Artistic-2.0
URL
Depends On Me	easyRNASeq, girafe, HiTC
Imports Me
Suggests Me	RnaSeqTutorial
Version	1.12.0
Since	Bioconductor 2.4 (R-2.9)

Package Downloads

Package Source	genomeIntervals_1.12.0.tar.gz
Windows Binary	genomeIntervals_1.12.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	genomeIntervals_1.12.0.tgz
Package Downloads Report	Download Stats

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