HiTC

High Throughput Chromosome Conformation Capture analysis

Bioconductor version: 2.10

The HiTC package was developed to explore high-throughput 'C' data such as 5C or Hi-C.

Author: Nicolas Servant

Maintainer: N. Servant <nicolas.servant at curie.fr>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("HiTC")

To cite this package in a publication, start R and enter:

    citation("HiTC")

Documentation

PDF R Script Hight-Throughput Chromosome Conformation Capture analysis
PDF   Reference Manual
Text   NEWS

Details

biocViews HighThroughputSequencing, Sequencing, Software
Depends R (>= 2.10.0), methods, girafe(>= 1.3.1), genomeIntervals(>= 1.7.1), RColorBrewer
Imports methods, Biobase, Biostrings, graphics, grDevices, ShortRead
Suggests
System Requirements
License Artistic-2.0
URL
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.10 (R-2.15)

Package Downloads

Package Source HiTC_1.0.0.tar.gz
Windows Binary HiTC_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary HiTC_1.0.0.tgz
Package Downloads Report Download Stats

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