HiTC
High Throughput Chromosome Conformation Capture analysis
Bioconductor version: 2.10
The HiTC package was developed to explore high-throughput 'C' data such as 5C or Hi-C.
Author: Nicolas Servant
Maintainer: N. Servant <nicolas.servant at curie.fr>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("HiTC")
To cite this package in a publication, start R and enter:
citation("HiTC")
Documentation
| R Script | Hight-Throughput Chromosome Conformation Capture analysis | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | HighThroughputSequencing, Sequencing, Software |
| Depends | R (>= 2.10.0), methods, girafe(>= 1.3.1), genomeIntervals(>= 1.7.1), RColorBrewer |
| Imports | methods, Biobase, Biostrings, graphics, grDevices, ShortRead |
| Suggests | |
| System Requirements | |
| License | Artistic-2.0 |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Version | 1.0.0 |
| Since | Bioconductor 2.10 (R-2.15) |
Package Downloads
| Package Source | HiTC_1.0.0.tar.gz |
| Windows Binary | HiTC_1.0.0.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | HiTC_1.0.0.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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