ReactomePA

Reactome Pathway Analysis

Bioconductor version: 2.10

This package provides functions for pathway analysis based on REACTOME pathway database. It will implement enrichment analysis, gene set enrichment analysis and functional modules detection.

Author: Guangchuang Yu <guangchuangyu at gmail.com>

Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("ReactomePA")

To cite this package in a publication, start R and enter:

    citation("ReactomePA")

Documentation

PDF	R Script	An introduction to ReactomePA
PDF	R Script	cnetplot.pdf
PDF	R Script	rPAclusterProfiler.pdf
PDF		Reference Manual
Text		NEWS

Details

biocViews	Bioinformatics, Pathways, Software, Visualization
Depends
Imports	methods, AnnotationDbi, reactome.db, stats4, plyr, igraph0, qvalue, graphics, org.Hs.eg.db
Suggests	clusterProfiler, DOSE, GOSemSim
System Requirements
License	GPL-2
URL
Depends On Me
Imports Me
Suggests Me	clusterProfiler, DOSE
Version	1.0.1
Since	Bioconductor 2.10 (R-2.15)

Package Downloads

Package Source	ReactomePA_1.0.1.tar.gz
Windows Binary	ReactomePA_1.0.1.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary	ReactomePA_1.0.1.tgz
Package Downloads Report	Download Stats

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