DOSE
Disease Ontology Semantic and Enrichment analysis
Bioconductor version: 2.10
Implemented five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for measuring DO semantic similarities, and hypergeometric test for enrichment analysis.
Author: Guangchuang Yu, Li-Gen Wang
Maintainer: Guangchuang Yu <guangchuangyu at gmail.com>
To install this package, start R and enter:
source("http://bioconductor.org/biocLite.R")
biocLite("DOSE")
To cite this package in a publication, start R and enter:
citation("DOSE")
Documentation
| R Script | An introduction to DOSE | |
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Annotation, Bioinformatics, Software |
| Depends | R (>= 2.10) |
| Imports | methods, plyr, qvalue, stats4, AnnotationDbi, DO.db, org.Hs.eg.db, igraph, scales, ggplot2, graphics |
| Suggests | clusterProfiler, GOSemSim, ReactomePA |
| System Requirements | |
| License | Artistic-2.0 |
| URL | |
| Depends On Me | |
| Imports Me | clusterProfiler |
| Suggests Me | GOSemSim, ReactomePA |
| Version | 1.2.1 |
| Since | Bioconductor 2.9 (R-2.14) |
Package Downloads
| Package Source | DOSE_1.2.1.tar.gz |
| Windows Binary | DOSE_1.2.1.zip (32- & 64-bit) |
| MacOS 10.5 (Leopard) binary | DOSE_1.2.1.tgz |
| Package Downloads Report | Download Stats |
Common Bioconductor workflows include:
- Oligonucleotide Arrays
- High-throughput Sequencing
- Annotation
- Variants
- Flow Cytometry and other assays
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