Reactome Pathway Analysis


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Documentation for package ‘ReactomePA’ version 1.0.1

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ReactomePA-package Reactome Pathway Analysis
DataSet Datasets sample contains a sample of gene IDs.
enrichPathway Pathway Enrichment Analysis of a gene set. Given a vector of genes, this function will return the enriched pathways with FDR control.
enrichPathwayResult-class Class "enrichPathwayResult"
geneID2Name convert gene IDs to gene Names
pathID2Name pathID2Name
plot plot method
plot-method Class "enrichPathwayResult"
plot-method plot method
ReactomePA Reactome Pathway Analysis
sample Datasets sample contains a sample of gene IDs.
show show method
show-method Class "enrichPathwayResult"
summary summary method
summary-method Class "enrichPathwayResult"