To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RnBeads")

In most cases, you don't need to download the package archive at all.

RnBeads

Bioconductor version: Release (3.5)

RnBeads facilitates comprehensive analysis of various types of DNA methylation data at the genome scale.

Author: Yassen Assenov [aut], Pavlo Lutsik [aut], Fabian Mueller [aut, cre]

Maintainer: Fabian Mueller <rnbeads at mpi-inf.mpg.de>

Citation (from within R, enter citation("RnBeads")):

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("RnBeads")

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("RnBeads")

PDF	R Script	Comprehensive DNA Methylation Analysis with RnBeads
PDF	R Script	RnBeads Annotation
PDF		Reference Manual
Text		README
Text		NEWS

biocViews	BatchEffect, CpGIsland, DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, MethylSeq, MethylationArray, Preprocessing, QualityControl, Sequencing, Software, TwoChannel
Version	1.8.0
In Bioconductor since	BioC 3.1 (R-3.2) (2.5 years)
License	GPL-3
Depends	R (>= 3.0.0), BiocGenerics, S4Vectors(>= 0.9.25), GenomicRanges, MASS, cluster, ff, fields, ggplot2 (>= 0.9.2), gplots, gridExtra, limma, matrixStats, methods, illuminaio, methylumi, plyr
Imports	IRanges
LinkingTo
Suggests	Category, GEOquery, GOstats, Gviz, IlluminaHumanMethylation450kmanifest, RPMM, RefFreeEWAS, RnBeads.hg19, XML, annotate, biomaRt, foreach, doParallel, ggbio, isva, mclust, mgcv, minfi, nlme, org.Hs.eg.db, org.Mm.eg.db, org.Rn.eg.db, quadprog, rtracklayer, sva, wateRmelon, wordcloud, argparse, glmnet, impute, GLAD, IlluminaHumanMethylation450kanno.ilmn12.hg19, scales
SystemRequirements
Enhances
URL
Depends On Me
Imports Me
Suggests Me	RnBeads.hg19, RnBeads.hg38, RnBeads.mm10, RnBeads.mm9, RnBeads.rn5
Build Report

Follow Installation instructions to use this package in your R session.

Source Package	RnBeads_1.8.0.tar.gz
Windows Binary	RnBeads_1.8.0.zip
Mac OS X 10.11 (El Capitan)	RnBeads_1.8.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/RnBeads
Package Short Url	http://bioconductor.org/packages/RnBeads/
Package Downloads Report	Download Stats

Documentation »

Bioconductor

R / CRAN packages and documentation

Please read the posting guide. Post questions about Bioconductor to one of the following locations: