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DOI: 10.18129/B9.bioc.GOstats    

Tools for manipulating GO and microarrays.

Bioconductor version: Release (3.5)

A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.

Author: R. Gentleman and S. Falcon

Maintainer: Bioconductor Package Maintainer <maintainer at>

Citation (from within R, enter citation("GOstats")):


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PDF R Script Hypergeometric tests for less common model organisms
PDF R Script Hypergeometric Tests Using GOstats
PDF R Script Visualizing Data Using GOstats
PDF   Reference Manual


biocViews Annotation, GO, GeneExpression, GeneSetEnrichment, GraphAndNetwork, Microarray, MultipleComparison, Pathways, Software
Version 2.42.0
In Bioconductor since BioC 1.6 (R-2.1) or earlier (> 12.5 years)
License Artistic-2.0
Depends R (>= 2.10), Biobase(>= 1.15.29), Category(>= 2.3.26), graph
Imports methods, stats, stats4, AnnotationDbi(>= 0.0.89), Biobase(>= 1.15.29), Category(>= 2.3.26), GO.db(>= 1.13.0), RBGL, annotate(>= 1.13.2), graph(>= 1.15.15), AnnotationForge
Suggests hgu95av2.db(>= 1.13.0), ALL, GO.db(>= 1.13.0), annotate, multtest, genefilter, RColorBrewer, Rgraphviz, xtable, SparseM, GSEABase, geneplotter,, RUnit, BiocGenerics
Depends On Me MineICA, RDAVIDWebService
Imports Me affycoretools, attract, categoryCompare, facopy, ideal, MIGSA, mvGST, pcaExplorer, ProCoNA, ReportingTools, systemPipeR
Suggests Me BiocCaseStudies, Category, eisa, fastLiquidAssociation, GSEAlm, HTSanalyzeR, interactiveDisplay, MineICA, miRLAB, MLP, MmPalateMiRNA, oneChannelGUI, phenoDist, qpgraph, RnBeads, safe
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