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DOI: 10.18129/B9.bioc.minfi    

Analyze Illumina Infinium DNA methylation arrays

Bioconductor version: Release (3.5)

Tools to analyze & visualize Illumina Infinium methylation arrays.

Author: Kasper Daniel Hansen [cre, aut], Martin Aryee [aut], Rafael A. Irizarry [aut], Andrew E. Jaffe [ctb], Jovana Maksimovic [ctb], E. Andres Houseman [ctb], Jean-Philippe Fortin [ctb], Tim Triche [ctb], Shan V. Andrews [ctb]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at>

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PDF R Script minfi User's Guide
PDF   Reference Manual
Text   NEWS


biocViews DNAMethylation, DataImport, DifferentialMethylation, Epigenetics, MethylationArray, Microarray, MultiChannel, Normalization, Preprocessing, QualityControl, Software, TwoChannel
Version 1.22.1
In Bioconductor since BioC 2.9 (R-2.14) (6 years)
License Artistic-2.0
Depends methods, BiocGenerics(>= 0.15.3), GenomicRanges, SummarizedExperiment(>= 1.1.6), Biostrings, bumphunter(>= 1.1.9)
Imports S4Vectors, GenomeInfoDb, Biobase(>= 2.33.2), IRanges, beanplot, RColorBrewer, lattice, nor1mix, siggenes, limma, preprocessCore, illuminaio, matrixStats (>= 0.50.0), mclust, genefilter, nlme, reshape, MASS, quadprog, data.table, GEOquery, stats, grDevices, graphics, utils
Suggests IlluminaHumanMethylation450kmanifest(>= 0.2.0), IlluminaHumanMethylation450kanno.ilmn12.hg19(>= 0.2.1), minfiData(>= 0.18.0), minfiDataEPIC, FlowSorted.Blood.450k(>= 1.0.1), RUnit, digest, BiocStyle, knitr, rmarkdown
Depends On Me bigmelon, ChAMP, conumee, CopyNumber450kData, DMRcate, ENmix, FlowSorted.Blood.450k, FlowSorted.CordBlood.450k, FlowSorted.CordBloodNorway.450k, FlowSorted.DLPFC.450k, IlluminaHumanMethylation27kanno.ilmn12.hg19, IlluminaHumanMethylation27kmanifest, IlluminaHumanMethylation450kanno.ilmn12.hg19, IlluminaHumanMethylation450kmanifest, IlluminaHumanMethylationEPICanno.ilm10b2.hg19, IlluminaHumanMethylationEPICanno.ilm10b3.hg19, IlluminaHumanMethylationEPICmanifest, methylumi, minfiData, minfiDataEPIC, REMP, shinyMethyl
Imports Me ELMER, funtooNorm, MEAL, MethylAid, methylumi, missMethyl, quantro, skewr
Suggests Me Harman, MultiDataSet, RnBeads
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