chopsticks

The snp.matrix and X.snp.matrix classes

Bioconductor version: 2.8

Implements classes and methods for large-scale SNP association studies

Author: Hin-Tak Leung <htl10 at users.sourceforge.net>

Maintainer: Hin-Tak Leung <htl10 at users.sourceforge.net>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("chopsticks")

To cite this package in a publication, start R and enter:

    citation("chopsticks")

Documentation

PDF R Script chopsticks introduction
PDF R Script Imputation and meta-analysis
PDF R Script Principal components analysis
PDF R Script Rill
PDF snpMatrix-paper-HumanHeridity2007.pdf
PDF R Script TDT tests
PDF   Reference Manual

Details

biocViews Microarray, SNP, GeneticVariability
Depends R(>= 2.3.0), survival, methods
Imports graphics, grDevices, methods, stats, survival, utils
Suggests hexbin
System Requirements
License GPL-3
URL http://sourceforge.net/projects/outmodedbonsai/
Depends On Me
Imports Me
Suggests Me ind1KG
Version 1.16.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source chopsticks_1.16.0.tar.gz
Windows Binary chopsticks_1.16.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary chopsticks_1.16.0.tgz
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