marray

Exploratory analysis for two-color spotted microarray data

Bioconductor version: 2.8

Class definitions for two-color spotted microarray data. Fuctions for data input, diagnostic plots, normalization and quality checking.

Author: Yee Hwa (Jean) Yang <jeany at maths.usyd.edu.au> with contributions from Agnes Paquet and Sandrine Dudoit.

Maintainer: Yee Hwa (Jean) Yang <jean at biostat.ucsf.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("marray")

To cite this package in a publication, start R and enter:

    citation("marray")

Documentation

PDF ExampleHTML.pdf
PDF R Script marray Normalization
PDF R Script marray Overview
PDF R Script marrayClasses Overview
PDF R Script marrayClasses Tutorial (short)
PDF R Script marrayInput Introduction
PDF R Script marrayPlots Overview
PDF widget1.pdf
PDF   Reference Manual

Details

biocViews Microarray, TwoChannel, Preprocessing
Depends R (>= 1.9.0), limma, methods
Imports
Suggests tkWidgets
System Requirements
License LGPL
URL http://www.maths.usyd.edu.au/u/jeany/
Depends On Me beta7, CGHbase, convert, dyebias, dyebiasexamples, maigesPack, nnNorm, OLIN, RMAGEML, stepNorm, TurboNorm
Imports Me arrayQuality, GeneTraffic, nnNorm, OLIN, OLINgui, stepNorm, timecourse
Suggests Me Agi4x44PreProcess, AgiMicroRna, DEGraph, hexbin, Mfuzz
Version 1.30.0
Since Bioconductor 1.6 (R-2.1) or earlier

Package Downloads

Package Source marray_1.30.0.tar.gz
Windows Binary marray_1.30.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary marray_1.30.0.tgz
Package Downloads Report Download Stats

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