TurboNorm

A fast scatterplot smoother suitable for microarray normalization

Bioconductor version: 2.8

A fast scatterplot smoother based on B-splines with second-order difference penalty. Functions for microarray normalization of single-colour data i.e. Affymetrix/Illumina and two-colour data supplied as marray MarrayRaw-objects or limma RGList-objects are available.

Author: Maarten van Iterson and Chantal van Leeuwen

Maintainer: Maarten van Iterson <M.van_iterson.HG at lumc.nl>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("TurboNorm")

To cite this package in a publication, start R and enter:

    citation("TurboNorm")

Documentation

PDF R Script TurboNorm Overview
PDF   Reference Manual

Details

biocViews Microarray, OneChannel, TwoChannel, Preprocessing, DNAMethylation, CpGIsland
Depends R (>= 2.12.0), convert, limma(>= 1.7.0), marray
Imports stats, grDevices, affy, lattice
Suggests affydata, affy, lattice
System Requirements
License LGPL
URL http://www.humgen.nl/MicroarrayAnalysisGroup.html
Depends On Me
Imports Me
Suggests Me
Version 1.0.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source TurboNorm_1.0.0.tar.gz
Windows Binary TurboNorm_1.0.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary TurboNorm_1.0.0.tgz
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