To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CNTools")

In most cases, you don't need to download the package archive at all.

CNTools

   

This package is for version 2.8 of Bioconductor; for the stable, up-to-date release version, see CNTools.

Convert segment data into a region by sample matrix to allow for other high level computational analyses.

Bioconductor version: 2.8

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

Author: Jianhua Zhang

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

Citation (from within R, enter citation("CNTools")):

Installation

To install this package, start R and enter:

## try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R")
biocLite("CNTools")

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("CNTools")

 

PDF HowTo.pdf
PDF   Reference Manual

Details

biocViews CopyNumberVariants, Microarray, Software
Version 1.8.0
In Bioconductor since BioC 2.5 (R-2.10) (6.5 years)
License LGPL
Depends methods, tools, stats, genefilter
Imports
LinkingTo
Suggests
SystemRequirements
Enhances
URL
Depends On Me cghMCR
Imports Me
Suggests Me
Build Report  

Package Archives

Follow Installation instructions to use this package in your R session.

Package Source CNTools_1.8.0.tar.gz
Windows Binary CNTools_1.8.0.zip (32- & 64-bit)
Mac OS X 10.6 (Snow Leopard)
Mac OS X 10.9 (Mavericks)
Subversion source (username/password: readonly)
Git source https://github.com/Bioconductor-mirror/CNTools/tree/release-2.8
Package Short Url http://bioconductor.org/packages/CNTools/
Package Downloads Report Download Stats

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