CNTools

Convert segment data into a region by sample matrix to allow for other high level computational analyses.

Bioconductor version: 2.8

This package provides tools to convert the output of segmentation analysis using DNAcopy to a matrix structure with overlapping segments as rows and samples as columns so that other computational analyses can be applied to segmented data

Author: Jianhua Zhang

Maintainer: J. Zhang <jzhang at jimmy.harvard.edu>

To install this package, start R and enter:

    source("http://bioconductor.org/biocLite.R")
    biocLite("CNTools")

To cite this package in a publication, start R and enter:

    citation("CNTools")

Documentation

PDF R Script NCTools HowTo
PDF   Reference Manual

Details

biocViews Microarray, CopyNumberVariants
Depends methods, tools, stats, genefilter
Imports
Suggests
System Requirements
License LGPL
URL
Depends On Me cghMCR
Imports Me
Suggests Me
Version 1.8.0
Since Bioconductor 2.5 (R-2.10)

Package Downloads

Package Source CNTools_1.8.0.tar.gz
Windows Binary CNTools_1.8.0.zip (32- & 64-bit)
MacOS 10.5 (Leopard) binary CNTools_1.8.0.tgz
Package Downloads Report Download Stats

Workflows »

Common Bioconductor workflows include:

 

Mailing Lists »

Post questions about Bioconductor packages to our mailing lists. Read the posting guide before posting!

Fred Hutchinson Cancer Research Center