Processing and analyzing bisulfite sequencing data

Bioconductor version: Release (2.12)

The BiSeq package provides useful classes and functions to handle and analyze targeted bisulfite sequencing (BS) data such as reduced-representation bisulfite sequencing (RRBS) data. In particular, it implements an algorithm to detect differentially methylated regions (DMRs). The package takes already aligned BS data from one or multiple samples.

Author: Katja Hebestreit, Hans-Ulrich Klein

Maintainer: Katja Hebestreit <katja.hebestreit at>

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PDF R Script An Introduction to BiSeq
PDF   Reference Manual


biocViews DNAMethylation, Genetics, HighThroughputSequencing, Methylseq, Sequencing, Software
Version 1.0.3
In Bioconductor since BioC 2.13 (R-2.18)
License LGPL-3
Depends R (>= 2.15.2), methods, IRanges(>= 1.17.24), GenomicRanges, Formula
Imports methods, BiocGenerics, Biobase, IRanges, GenomicRanges, rtracklayer, parallel, betareg, lokern, Formula
System Requirements
Depends On Me
Imports Me
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Package Source BiSeq_1.0.3.tar.gz
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Mac OS X 10.6 (Snow Leopard) BiSeq_1.0.3.tgz
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