Predicting functional networks and modules of chromatin factors controlling adult stem cell fate from RNA interference screens

Bioconductor version: 2.10

This package provides functions to reproduce results and figures in Mulder K. et. al. published in Nature Cell Biology 2012 and Wang X. et. al. published in PLoS Computational Biology 2012.

Author: Xin Wang <Xin.Wang at>, Florian Markowetz <Florian.Markowetz at>

Maintainer: Xin Wang <Xin.Wang at>

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PDF R Script Arora2010_PAN.pdf
PDF R Script Arora2010_sigMod.pdf
PDF R Script Main vignette:Posterior association network and enriched functional gene modules inferred from rich phenotypes of gene perturbations
PDF R Script Mulder2012_enrich.pdf
PDF R Script Mulder2012_PAN.pdf
PDF R Script Mulder2012_sigMod.pdf
PDF   Reference Manual
Text   NEWS


biocViews Bioinformatics, ExperimentData
Depends R (>= 2.14),, KEGG.db
Imports igraph, HTSanalyzeR, PANR, RedeR, pvclust, MASS
Suggests snow
System Requirements
License Artistic-2.0
Depends On Me
Imports Me
Suggests Me
Version 0.2.1

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Package Source Mulder2012_0.2.1.tar.gz
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MacOS 10.5 (Leopard) binary Mulder2012_0.2.1.tgz
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Fred Hutchinson Cancer Research Center