Bridging the gap between hierarchical network representation and functional analysis.

Bioconductor version: 2.10

RedeR is an R-based package combined with a stand-alone Java application for dynamic network visualization and manipulation. It implements a callback engine by using a low-level R-to-Java interface to build and run common plugins. In this sense, RedeR takes advantage of R to run robust statistics, while the R-to-Java interface bridges the gap between network analysis and visualization: for R Developers, it allows the development of Java plug-ins exclusively using R codes; for Java Users, it runs R methods implemented in a stand-alone application, and for R Users RedeR interactively displays R graphs using a robust Java graphic engine embedded in this package.

Author: Mauro Castro, Xin Wang, Florian Markowetz

Maintainer: Mauro Castro <mauro.a.castro at>

To install this package, start R and enter:


To cite this package in a publication, start R and enter:



PDF R Script fig1.pdf
PDF R Script fig2.pdf
PDF R Script fig3.pdf
PDF R Script fig4.pdf
PDF R Script fig5a.pdf
PDF R Script fig5b.pdf
PDF R Script fig5c.pdf
PDF R Script fig6.pdf
PDF R Script Main vignette: RedeR Overview
PDF   Reference Manual
Text   NEWS


biocViews GUI, GraphsAndNetworks, Software, Visualization
Depends R (>= 2.15), igraph0, RCurl, XML, XMLRPC
Imports rJava, methods
Suggests PANR, HTSanalyzeR, pvclust, graph
System Requirements
License GPL (>= 2)
Depends On Me
Imports Me Mulder2012
Suggests Me PANR
Version 1.2.5
Since Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source RedeR_1.2.5.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary RedeR_1.2.5.tgz
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