Posterior association networks and functional modules inferred from rich phenotypes of gene perturbations

Bioconductor version: 2.10

This package provides S4 classes and methods for inferring functional gene networks with edges encoding posterior beliefs of gene association types and nodes encoding perturbation effects.

Author: Xin Wang <Xin.Wang at>

Maintainer: Xin Wang <Xin.Wang at>

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To cite this package in a publication, start R and enter:



PDF R Script fullPAN.pdf
PDF R Script pvmodule.pdf
PDF R Script sigmod.pdf
PDF   Reference Manual
Text   NEWS


biocViews CellBasedAssays, Clustering, GraphsAndNetworks, Software, Visualization
Depends R (>= 2.14), igraph
Imports graphics, grDevices, MASS, methods, pvclust, stats, utils
Suggests snow, RedeR
System Requirements
License Artistic-2.0
Depends On Me
Imports Me Mulder2012
Suggests Me RedeR
Version 1.2.3
Since Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source PANR_1.2.3.tar.gz
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MacOS 10.5 (Leopard) binary PANR_1.2.3.tgz
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