Annotation of Genetic Variants

Bioconductor version: 2.10

Annotate variants with respect to location and amino acid coding

Author: Valerie Obenchain, Martin Morgan, Michael Lawrence

Maintainer: Valerie Obenchain <vobencha at>

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PDF R Script Introduction to VariantAnnotation
PDF   Reference Manual
Text   NEWS


biocViews Annotation, DataImport, Genetics, HighThroughputSequencing, Homo_sapiens, SNP, Sequencing, Software
Depends R (>= 2.8.0), methods, GenomicRanges(>= 1.8.13), Rsamtools(>= 1.7.41)
Imports methods, BiocGenerics(>= 0.1.0), IRanges(>= 1.13.5), Biobase(>= 2.15.1), Rsamtools(>= 1.7.41), AnnotationDbi(>= 1.17.11), Biostrings(>= 2.23.4), zlibbioc, BSgenome, GenomicFeatures, snpStats, DBI
Suggests RUnit, BSgenome.Hsapiens.UCSC.hg19, TxDb.Hsapiens.UCSC.hg19.knownGene, SNPlocs.Hsapiens.dbSNP.20110815, SIFT.Hsapiens.dbSNP132, PolyPhen.Hsapiens.dbSNP131
System Requirements
License Artistic-2.0
Depends On Me cgdv17, PolyPhen.Hsapiens.dbSNP131, SIFT.Hsapiens.dbSNP132
Imports Me ggbio, GGtools
Suggests Me GenomicRanges
Version 1.2.11
Since Bioconductor 2.9 (R-2.14)

Package Downloads

Package Source VariantAnnotation_1.2.11.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary VariantAnnotation_1.2.11.tgz
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