SnpMatrix and XSnpMatrix classes and methods

Bioconductor version: 2.10

Classes and statistical methods for large SNP association studies, extending the snpMatrix package (now removed)

Author: David Clayton <david.clayton at>

Maintainer: David Clayton <david.clayton at>

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PDF R Script Data input
PDF R Script Imputation and meta-analysis
PDF R Script LD statistics
PDF R Script Principal components analysis
PDF R Script snpMatrix-differences
PDF R Script snpStats introduction
PDF R Script TDT tests
PDF   Reference Manual


biocViews GeneticVariability, Microarray, SNP, Software
Depends R(>= 2.10.0), survival, methods, Matrix
Imports graphics, grDevices, methods, stats, survival, utils, Matrix
Suggests hexbin
System Requirements
License GPL-3
Depends On Me GGBase, GGdata, ggtut, gwascat
Imports Me GGtools, VariantAnnotation
Suggests Me crlmm
Version 1.6.0
Since Bioconductor 2.8 (R-2.13)

Package Downloads

Package Source snpStats_1.6.0.tar.gz
Windows Binary (32- & 64-bit)
MacOS 10.5 (Leopard) binary snpStats_1.6.0.tgz
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