DOI: 10.18129/B9.bioc.ccTutorial    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ccTutorial.

Data package for ChIP-chip tutorial

Bioconductor version: 3.9

This is a data package that accompanies a ChIP-chip tutorial, which has been published in PLoS Computational Biology. The data and source code in this package allow the reader to completely reproduce the steps in the tutorial.

Author: Joern Toedling, Wolfgang Huber

Maintainer: Joern Toedling <joern.toedling at>

Citation (from within R, enter citation("ccTutorial")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script A tutorial on how to analyze ChIP-chip readouts using Bioconductor
PDF R Script Supplement to A tutorial on how to analyze ChIP-chip readouts using Bioconductor
PDF   Reference Manual


biocViews ChipOnChipData, ExperimentData, MicroarrayData, Mus_musculus_Data
Version 1.22.0
License Artistic-2.0
Depends R (>= 2.10), Ringo(>= 1.9.8), affy(>= 1.23.4), topGO(>= 1.13.1)
Imports Biobase
Suggests biomaRt, Biobase(>= 2.5.5), xtable
Depends On Me
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Source Package ccTutorial_1.22.0.tar.gz
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