DOI: 10.18129/B9.bioc.sesame    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see sesame.

Tools For Analyzing Illumina Infinium DNA Methylation Arrays

Bioconductor version: 3.9

Tools For analyzing Illumina Infinium DNA methylation arrays.

Author: Wanding Zhou [aut, cre], Hui Shen [aut], Timothy Triche [ctb], Bret Barnes [ctb]

Maintainer: Wanding Zhou <zhouwanding at>

Citation (from within R, enter citation("sesame")):


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HTML R Script 0. SeSAMe User Guide
HTML R Script 1. Quality Controls
HTML R Script 2. Large Data
HTML R Script 3. Minfi Interaction
PDF   Reference Manual
Text   NEWS


biocViews DNAMethylation, MethylationArray, Preprocessing, QualityControl, Software
Version 1.2.0
In Bioconductor since BioC 3.8 (R-3.5) (1 year)
License Artistic-2.0
Depends R (>= 3.5), sesameData, methods
Imports BiocParallel, R6, grDevices, utils, illuminaio, MASS, GenomicRanges, IRanges, grid, preprocessCore, stats, S4Vectors, randomForest, wheatmap, ggplot2, parallel, matrixStats, DNAcopy
Suggests scales, knitr, rmarkdown, testthat, minfi, SummarizedExperiment, FlowSorted.CordBloodNorway.450k, FlowSorted.Blood.450k, dplyr, tidyr, BiocStyle
Depends On Me
Imports Me TCGAbiolinksGUI
Suggests Me sesameData, TCGAbiolinks
Links To Me
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