DOI: 10.18129/B9.bioc.proteoQC    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see proteoQC.

An R package for proteomics data quality control

Bioconductor version: 3.9

This package creates an HTML format QC report for MS/MS-based proteomics data. The report is intended to allow the user to quickly assess the quality of proteomics data.

Author: Bo Wen <wenbo at>, Laurent Gatto <lg390 at>

Maintainer: Bo Wen <wenbo at>

Citation (from within R, enter citation("proteoQC")):


To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))


For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



HTML R Script 00 proteoQC introduction
PDF   Reference Manual
Text   NEWS


biocViews ImmunoOncology, MassSpectrometry, Proteomics, QualityControl, ReportWriting, Software, Visualization
Version 1.20.0
In Bioconductor since BioC 3.0 (R-3.1) (5 years)
License LGPL-2
Depends R (>= 3.0.0), XML, VennDiagram, MSnbase
Imports rTANDEM, plyr, seqinr, Nozzle.R1, ggplot2, reshape2, parallel, rpx, tidyr, dplyr, plotly, rmarkdown
Suggests RforProteomics, knitr, BiocStyle, R.utils, RUnit, BiocGenerics
Depends On Me
Imports Me
Suggests Me
Links To Me
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Follow Installation instructions to use this package in your R session.

Source Package proteoQC_1.20.0.tar.gz
Windows Binary
Mac OS X 10.11 (El Capitan) proteoQC_1.20.0.tgz
Source Repository git clone
Source Repository (Developer Access) git clone
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