CHANGES IN VERSION 1.9.4 ------------------------- o Update the parameters for new version of ggplot2 CHANGES IN VERSION 1.3.2 ------------------------- o Update description file CHANGES IN VERSION 1.3.1 ------------------------- o Update the function labelRatio o Update the vignette CHANGES IN VERSION 1.1.10 ------------------------- o fixed typos in vignette CHANGES IN VERSION 1.1.9 ------------------------ o add function "proteinGroup" CHANGES IN VERSION 1.1.8 ------------------------ o update function "chargeStat" o change file name CHANGES IN VERSION 1.1.7 ------------------------ o add new function for calculation of labeling efficiency CHANGES IN VERSION 1.1.6 ------------------------ o update vignette CHANGES IN VERSION 1.1.5 ------------------------ o add function "chargeStat" CHANGES IN VERSION 1.1.4 ------------------------ o fix several typos in vignette CHANGES IN VERSION 1.1.3 ------------------------ o support MS/MS searching without modification CHANGES IN VERSION 1.1.2 ------------------------ o change the figure of missed cleavages o fix several typos in vignette CHANGES IN VERSION 1.1.1 ------------------------ o fix a minor bug CHANGES IN VERSION 1.1.0 ------------------------ o support mz[X]ML format file o add identification-independent metrics CHANGES IN VERSION 0.99.8 ------------------------ o change the head of input design file: mgf -> file CHANGES IN VERSION 0.99.7 ------------------------ o Update unit test CHANGES IN VERSION 0.99.6 ------------------------ o fix: Vignette sources in 'inst/doc' missing from the 'vignettes' directory CHANGES IN VERSION 0.99.5 ------------------------ o fix a bug for qcHist o function "plotFractionIDResult" update CHANGES IN VERSION 0.99.4 ------------------------ o add unit test CHANGES IN VERSION 0.99.3 ------------------------ o Most of the figures re-ploted using ggplot2 CHANGES IN VERSION 0.99.2 ------------------------ o package version numbering o format NEWS file o remove README.md file o removed most of the unused commented code CHANGES IN VERSION 0.99.1 ------------------------ o Format the code CHANGES IN VERSION 0.99.0 ------------------------ o updated DESCRIPTION: version, biocViews, VignetteBuilder o initial draft of vignette o msQCres S3 class and print method o msQCres saved in outdir o reportHTML can take msQCres of MsmqC dir o new loadmsQCres function o reduced example data o using PXD000864 in vignette o updating NAMESPACE