dcanr

DOI: 10.18129/B9.bioc.dcanr    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see dcanr.

Differential co-expression/association network analysis

Bioconductor version: 3.9

Methods and an evaluation framework for the inference of differential co-expression/association networks.

Author: Dharmesh D. Bhuva [aut, cre]

Maintainer: Dharmesh D. Bhuva <bhuva.d at wehi.edu.au>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("dcanr")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("dcanr")

 

HTML	R Script	1. Differential co-expression analysis
HTML	R Script	2. DC method evaluation
PDF		Reference Manual
Text		NEWS

Details

biocViews	DifferentialExpression, GraphAndNetwork, Network, NetworkInference, Software
Version	1.0.0
In Bioconductor since	BioC 3.9 (R-3.6) (< 6 months)
License	GPL-3
Depends	R (>= 3.6.0)
Imports	igraph, foreach, plyr, stringr, reshape2, methods, Matrix, graphics, stats, RColorBrewer, circlize, doRNG
LinkingTo
Suggests	EBcoexpress, testthat, EBarrays, GeneNet, COSINE, mclust, minqa, SummarizedExperiment, Biobase, knitr, rmarkdown, BiocStyle, edgeR
SystemRequirements
Enhances	parallel, doSNOW, doParallel
URL	https://davislaboratory.github.io/dcanr/ https://github.com/DavisLaboratory/dcanr
BugReports	https://github.com/DavisLaboratory/dcanr/issues
Depends On Me
Imports Me	SingscoreAMLMutations
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	dcanr_1.0.0.tar.gz
Windows Binary	dcanr_1.0.0.zip
Mac OS X 10.11 (El Capitan)	dcanr_1.0.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/dcanr
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/dcanr
Package Short Url	https://bioconductor.org/packages/dcanr/
Package Downloads Report	Download Stats