DOI: 10.18129/B9.bioc.cobindR    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see cobindR.

Finding Co-occuring motifs of transcription factor binding sites

Bioconductor version: 3.9

Finding and analysing co-occuring motifs of transcription factor binding sites in groups of genes

Author: Manuela Benary, Stefan Kroeger, Yuehien Lee, Robert Lehmann

Maintainer: Manuela Benary <manuela.benary at>

Citation (from within R, enter citation("cobindR")):


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biocViews CellBiology, ChIPSeq, MultipleComparison, SequenceMatching, Software
Version 1.22.0
In Bioconductor since BioC 2.13 (R-3.0) (6 years)
License Artistic-2.0
Imports methods, seqinr, yaml, rtfbs, gplots, mclust, gmp, BiocGenerics(>= 0.13.8), IRanges, Biostrings, BSgenome, biomaRt
Suggests RUnit
Enhances rGADEM, seqLogo, genoPlotR, parallel, VennDiagram, RColorBrewer, vcd, MotifDb, snowfall
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