TSSi

DOI: 10.18129/B9.bioc.TSSi    

This package is for version 3.9 of Bioconductor. This package has been removed from Bioconductor. For the last stable, up-to-date release version, see TSSi.

Transcription Start Site Identification

Bioconductor version: 3.9

Identify and normalize transcription start sites in high-throughput sequencing data.

Author: Julian Gehring, Clemens Kreutz

Maintainer: Julian Gehring <jg-bioc at gmx.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("TSSi")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("TSSi")

 

PDF	R Script	Introduction to the TSSi package: Identification of Transcription Start Sites
PDF		Reference Manual

Details

biocViews	Genetics, Preprocessing, RNASeq, Sequencing, Software
Version	1.29.0
In Bioconductor since	BioC 2.9 (R-2.14) (8 years)
License	GPL-3
Depends	R (>= 2.13.2)
Imports	methods, BiocGenerics(>= 0.3.2), S4Vectors, Hmisc, minqa, stats, Biobase(>= 0.3.2), plyr, IRanges
LinkingTo
Suggests	rtracklayer
SystemRequirements
Enhances	parallel
URL
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	TSSi_1.29.0.tar.gz
Windows Binary	TSSi_1.29.0.zip
Mac OS X 10.11 (El Capitan)	TSSi_1.29.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/TSSi
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/TSSi
Package Short Url	https://bioconductor.org/packages/TSSi/
Package Downloads Report	Download Stats