DOI: 10.18129/B9.bioc.TSSi    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see TSSi.

Transcription Start Site Identification

Bioconductor version: 3.8

Identify and normalize transcription start sites in high-throughput sequencing data.

Author: Julian Gehring, Clemens Kreutz

Maintainer: Julian Gehring <jg-bioc at gmx.com>

Citation (from within R, enter citation("TSSi")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


To view documentation for the version of this package installed in your system, start R and enter:



PDF R Script Introduction to the TSSi package: Identification of Transcription Start Sites
PDF   Reference Manual


biocViews Genetics, Preprocessing, RNASeq, Sequencing, Software
Version 1.28.0
In Bioconductor since BioC 2.9 (R-2.14) (7.5 years)
License GPL-3
Depends R (>= 2.13.2)
Imports methods, BiocGenerics(>= 0.3.2), S4Vectors, Hmisc, minqa, stats, Biobase(>= 0.3.2), plyr, IRanges
Suggests rtracklayer
Enhances parallel
Depends On Me
Imports Me
Suggests Me
Links To Me
Build Report  

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Follow Installation instructions to use this package in your R session.

Source Package TSSi_1.28.0.tar.gz
Windows Binary TSSi_1.28.0.zip
Mac OS X 10.11 (El Capitan) TSSi_1.28.0.tgz
Source Repository git clone https://git.bioconductor.org/packages/TSSi
Source Repository (Developer Access) git clone git@git.bioconductor.org:packages/TSSi
Package Short Url http://bioconductor.org/packages/TSSi/
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