Rgraphviz

DOI: 10.18129/B9.bioc.Rgraphviz    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see Rgraphviz.

Provides plotting capabilities for R graph objects

Bioconductor version: 3.9

Interfaces R with the AT and T graphviz library for plotting R graph objects from the graph package.

Author: Kasper Daniel Hansen [cre, aut], Jeff Gentry [aut], Li Long [aut], Robert Gentleman [aut], Seth Falcon [aut], Florian Hahne [aut], Deepayan Sarkar [aut]

Maintainer: Kasper Daniel Hansen <kasperdanielhansen at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("Rgraphviz")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Rgraphviz")

 

PDF	R Script	A New Interface to Plot Graphs Using Rgraphviz
PDF	R Script	How To Plot A Graph Using Rgraphviz
PDF		Reference Manual
Text		NEWS

Details

biocViews	GraphAndNetwork, Software, Visualization
Version	2.28.0
In Bioconductor since	BioC 1.6 (R-2.1) or earlier (> 14.5 years)
License	EPL
Depends	R (>= 2.6.0), methods, utils, graph, grid
Imports	stats4, graphics, grDevices
LinkingTo
Suggests	RUnit, BiocGenerics, XML
SystemRequirements	optionally Graphviz (>= 2.16)
Enhances
URL
Depends On Me	biocGraph, BioMVCClass, CellNOptR, flowCL, flowMerge, GOFunction, maEndToEnd, MineICA, netresponse, paircompviz, pathRender, ROntoTools, SplicingGraphs, TDARACNE
Imports Me	apComplex, biocGraph, chimeraviz, CompGO, CytoML, DEGraph, EnrichmentBrowser, flowWorkspace, GeneNetworkBuilder, GOFunction, GOstats, hyperdraw, MIGSA, mirIntegrator, mnem, nem, OncoSimulR, ontoProc, paircompviz, pathview, Pigengene, qpgraph, RchyOptimyx, SplicingGraphs, trackViewer, TRONCO
Suggests Me	altcdfenvs, annotate, BiocCaseStudies, Category, CNORfeeder, CNORfuzzy, DEGraph, flowCore, geneplotter, GlobalAncova, globaltest, GSEABase, KEGGgraph, MLP, NCIgraph, NCIgraphData, pcaGoPromoter, pkgDepTools, RBGL, RBioinf, rBiopaxParser, RDAVIDWebService, RpsiXML, Rtreemix, safe, SNAData, SPIA, SRAdb, Streamer, topGO, vtpnet
Links To Me
Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	Rgraphviz_2.28.0.tar.gz
Windows Binary	Rgraphviz_2.28.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	Rgraphviz_2.28.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/Rgraphviz
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/Rgraphviz
Package Short Url	https://bioconductor.org/packages/Rgraphviz/
Package Downloads Report	Download Stats