GOFunction

DOI: 10.18129/B9.bioc.GOFunction    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see GOFunction.

GO-function: deriving biologcially relevant functions from statistically significant functions

Bioconductor version: 3.9

The GO-function package provides a tool to address the redundancy that result from the GO structure or multiple annotation genes and derive biologically relevant functions from the statistically significant functions based on some intuitive assumption and statistical testing.

Author: Jing Wang <jingwang.uestc at gmail.com>

Maintainer: Jing Wang <jingwang.uestc at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("GOFunction")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("GOFunction")

 

PDF	R Script	GO-function
PDF		Reference Manual

Details

biocViews	GO, GeneSetEnrichment, Microarray, Pathways, Software
Version	1.32.0
In Bioconductor since	BioC 2.9 (R-2.14) (8 years)
License	GPL (>= 2)
Depends	R (>= 2.11.0), methods, Biobase(>= 2.8.0), graph(>= 1.26.0), Rgraphviz(>= 1.26.0), GO.db(>= 2.4.1), AnnotationDbi(>= 1.10.2), SparseM (>= 0.85)
Imports	methods, Biobase, graph, Rgraphviz, GO.db, AnnotationDbi, DBI, SparseM
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Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	GOFunction_1.32.0.tar.gz
Windows Binary	GOFunction_1.32.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	GOFunction_1.32.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/GOFunction
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/GOFunction
Package Short Url	https://bioconductor.org/packages/GOFunction/
Package Downloads Report	Download Stats