ReQON

DOI: 10.18129/B9.bioc.ReQON    

This package is for version 3.9 of Bioconductor; for the stable, up-to-date release version, see ReQON.

Recalibrating Quality Of Nucleotides

Bioconductor version: 3.9

Algorithm for recalibrating the base quality scores for aligned sequencing data in BAM format.

Author: Christopher Cabanski, Keary Cavin, Chris Bizon

Maintainer: Christopher Cabanski <cabanskc at gmail.com>

Installation

To install this package, start R (version "3.6") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

BiocManager::install("ReQON")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("ReQON")

 

PDF	R Script	ReQON Tutorial
PDF		Reference Manual
Text		NEWS

Details

biocViews	HighThroughputSequencing, Preprocessing, QualityControl, Sequencing, Software
Version	1.30.0
In Bioconductor since	BioC 2.9 (R-2.14) (8 years)
License	GPL-2
Depends	R (>= 3.0.2), Rsamtools, seqbias
Imports	rJava, graphics, stats, utils, grDevices
LinkingTo
Suggests	BiocStyle
SystemRequirements	Java version >= 1.6
Enhances
URL
Depends On Me
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Build Report

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	ReQON_1.30.0.tar.gz
Windows Binary	ReQON_1.30.0.zip (32- & 64-bit)
Mac OS X 10.11 (El Capitan)	ReQON_1.30.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/ReQON
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/ReQON
Package Short Url	https://bioconductor.org/packages/ReQON/
Package Downloads Report	Download Stats