DOI: 10.18129/B9.bioc.gwascat    

This package is for version 3.8 of Bioconductor; for the stable, up-to-date release version, see gwascat.

representing and modeling data in the EMBL-EBI GWAS catalog

Bioconductor version: 3.8

Represent and model data in the EMBL-EBI GWAS catalog.

Author: VJ Carey <stvjc at>

Maintainer: VJ Carey <stvjc at>

Citation (from within R, enter citation("gwascat")):


To install this package, start R (version "3.5") and enter:

if (!requireNamespace("BiocManager", quietly = TRUE))

For older versions of R, please refer to the appropriate Bioconductor release.


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PDF R Script gwascat -- exploring NHGRI GWAS catalog
HTML R Script gwascat -- GRanges for GWAS hits in EBI catalog
PDF   Reference Manual
Text   NEWS


biocViews Genetics, Software
Version 2.14.0
In Bioconductor since BioC 2.10 (R-2.15) (7 years)
License Artistic-2.0
Depends R (>= 3.5.0), Homo.sapiens
Imports methods, BiocGenerics, S4Vectors(>= 0.9.25), IRanges, GenomeInfoDb, GenomicRanges(>= 1.29.6), snpStats, Biostrings, Rsamtools, rtracklayer, gQTLstats, Gviz, VariantAnnotation, AnnotationHub, AnnotationDbi, GenomicFeatures, graph, ggbio, ggplot2, SummarizedExperiment
Suggests DO.db, DT, utils, knitr, RBGL, RUnit
Enhances SNPlocs.Hsapiens.dbSNP144.GRCh37
Depends On Me liftOver, vtpnet
Imports Me
Suggests Me GenomicScores, gQTLBase, gQTLstats, grasp2db, hmdbQuery, TFutils
Links To Me
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Source Package gwascat_2.14.0.tar.gz
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